Physical & Computational Genomics Division 2012

Chang, Tien-Hsien

  • Wang, C.-Y., Wen, W.-L., Nilsson, D., Sunnerhagen, P., Chang, T.-H., and Wang, S.-W., 2012, “Analysis of stress granule assembly in Schizosaccharomyces pombe”, RNA, 18, 694-703. (SCI)
  • Huang J-Y, Su W-C, Jeng K-S, Chang T-H, Lai MMC, 2012, “Attenuation of 40S Ribosomal Subunit Abundance Differentially Affects Host and HCV Translation and Suppresses HCV Replication.”, PLoS Pathogens, 8(6), e1002766. (SCI)
  • Shea, F. F., Rowell, J. R., Li, Y., Chang, T.-H., and Alvarez, C. E., 2012, “Mammalian alpha arrestins link activated seven transmembrane receptors to Nedd4 family E3 ubiquitin ligases and interact with beta arrestins.”, PLoS One, 7(12), e50557. (SCI)

Chen, Chung-Hsuan

  • S. T. Tsai, C. N. Shen, C.C. Tsou, W. Y. Mao , W. C. Chang , W. L. Hsu, and C. H. Chen, 2012, “Label-free quantitative proteomics of CD133-positive liver cancer stem cells”, Proteome Science, 10(1), 69. (SCI)
  • PR Sudhir, CH Chen, KM Pavana, MJ Wang, CC Tsou, TY Sung, JY Chen, CH Chen , 2012, “Label-free quantitative proteomics and N-glycoproteomics analysis of KRAS-activated human bronchial epithelial cells”, Molecular and cellular proteomics, 11(10), 901-915. (SCI)
  • H. C. Lin, J. L. Lin, H. H. Lin, S. W. Tsai, Alice L. Yu, R. Chen, C. H. Chen, 2012, “High Speed Mass Measurement of Nanoparticle and Virus”, ANALYTICAL CHEMISTRY, 84(11), 4965-4969. (SCI)
  • M. Liu, D.F. Lee, C.T. Chen, C.J. Yen, L.Y. Li, H.J. Lee, C.J. Chang, W.C. Chang, J.M. Hsu, H.P. Kuo, W. Xia, Y. Wei, P.C. Chiu, C.K. Chou, Y. Du, D. Dhar, M. Karin, C.H. Chen, M.C. Hung, 2012, “IKKalpha activation of NOTCH links tumorigenesis via FOXA2 suppression”, MOLECULAR CELL, 45(2), 171-184. (SCI)
  • Y. F. Hsu, J. L. Lin, M. L. Chu, Y. S. Wang, Y. T. Lee, C. H. Chen, 2012, “Macromolecular Ion Accelerator”, ANALYTICAL CHEMISTRY, 84(13), 5765-5769. (SCI)
  • Y.L. Yu, R.H. Chou, C.H. Wu, Y.N. Wang, W.J. Chang, Y.J. Tseng. W.C. Chang, C.C. Lai, H.J. Lee, L. Huo, C.H. Chen, M.C. Hung, 2012, “Nuclear EGFR Suppresses Ribonuclease Activity of Polynucleotide Phosphorylase through DNAPK-mediated Phosphorylation at Serine 776”, The Journal of Biological Chemistry, 287(37), 31015-31026. (SCI)
  • L.C. Cheng, J.H. Huang, H.M. Chen, T.C. Lai, K.Y. Yang, R.S. Liu, M. Hsiao, C.H. Chen, L.J. Here and D. P. Tsai, 2012, “Seedless, silver-induced synthesis of star-shaped gold/silver bimetallic nanoparticles as high efficiency photothermal therapy reagent”, JOURNAL OF MATERIALS CHEMISTRY, 22(5), 2244-2253.
  • Y. Wang, Q. Ding, C.J. Yen, W. Xia, J. G. Izzo, J.Y. Lang, C.W. Li, J. L. Hsu, S. A. Miller, X. Wang, D.F. Lee, J.M. Hsu,. L. Huo, A. M. LaBaff, D. Liu, T.H. Huang, C.C. Lai, F.J. Tsai, W.C Chang, C.H. Chen, T.T. Wu, N.S. Buttar, K.K. Wang, Y. Wu, H. Wang, J. Ajani and M.C. Hung, 2012, “The Crosstalk of mTOR/S6K1and Hedgehog Pathways”, CANCER CELL, 21(3), 374-387. (SCI)
  • C.Y. Wang, T.H. Hsiao, L.H. Chu, Y.L. Lin, J.L. Huang, C.H. Chen and K. Peck, 2012, “Unraveling Virus Identity by Detection of Depleted Probes with Capillary Electrophoresis”, ANALYTICA CHIMICA ACTA, 734, 88-92. (SCI)

Chiu, Kuo Ping

  • Yu-Feng Huang†, Sheng-Chung Chen†, Yih-Shien Chiang, Tzu-Han Chen and Kuo-Ping Chiu, 2012, “Palindromic sequence impedes sequencing-by-ligation mechanism”, BMC Systems Biology, 6(Suppl 2), S10. (SCI)

Chuang, Trees-Juen

  • Jean-Christophe Gelly, Hsuan-Yu Lin, Alexandre G. de Brevern*, Trees-Juen Chuang*, Feng-Chi Chen*, 2012, “Selective Constraint on Human Pre-mRNA Splicing by Protein Structural Properties”, Genome Biology and Evolution, 4(9), 842-851. (SCI)
  • Ming-Chih Wang, Feng-Chi Chen*, Yen-Zho Chen, Yao-Ting Huang and Trees-Juen Chuang*, 2012, “LDGIdb: a database of gene interactions inferred from long-range strong linkage disequilibrium between pairs of SNPs.”, BMC Research Note, 5, 212.
  • Trees-Juen Chuang*, Feng-Chi Chen*, Yen-Zho Chen, 2012, “Position-dependent correlations between the level of DNA methylation and the evolutionary rates of mammalian coding exons”, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 109(39), 15841-15846 (impact factor: 9.737; ranking: 4/54: MULTIDISCIPLINARY SCIENCES). (SCI)

Wang, Yi Sheng

  • Y. Y. Zeng, H.-J. Chen, K. J. Shiau, S.-U. Hung, Y.-S. Wang, C.-C. Wu, 2012, “Efficient enrichment of phosphopeptides by magnetic TiO2-coated carbon-encapsulated iron nanoparticles ”, PROTEOMICS, 12 (3), 380-390. (SCI)
  • O. P. Charkin, N. M. Klimenko, Y.-S. Wang, 2012, HANDBOOK ON FULLERENE: SYNTHESIS, PROPERTIES AND APPLICATIONS, 313-334 pages, USA: Nova Science Publishers, Inc..
  • Y.-H. Lai, C.-C. Wang, B.-H. Liu, C. W. Chen, S.-H. Lin, Y. T. Lee, Y.-S. Wang*, 2012, “Analysis of initial reactions of MALDI based on chemical properties of matrices and excitation condition.”, JOURNAL OF PHYSICAL CHEMISTRY B, 116(32), 9635-9643. (SCI)
  • O. P. Charkin,* N. M. Klimenko, Y.-S. Wang, 2012, “Theoretical Study of C60(OH)20 and C60(OH)18 fullerenols and B12(OH)122-, B12(OH)122-, and B12(OH)122- polyhydroxyl clusters and their Li-substituted derivatives.”, RUSSIAN JOURNAL OF INORGANIC CHEMISTRY, 57(7), 970-980. (SCI)